Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs6445084 chr3:172453318 C/G 8.14E-5 134 25.8 36.63 45.47 KM Plot
TGCT rs645253 chr3:172418184 T/G 9.93E-5 131 45.47 39.05 25.33 KM Plot
TGCT rs6458297 chr6:42547891 C/T 3.69E-9 131 19.33 51.67 37.95 KM Plot
TGCT rs6469609 chr8:116905042 G/C 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs6469611 chr8:116916852 G/A 8.4E-7 133 46.3 28.7 18.83 KM Plot
TGCT rs6493 chr14:78140329 G/A 8.03E-5 133 45.47 39.38 18.07 KM Plot
TGCT rs6499785 chr16:55795214 C/T 0.000143 134 25.8 33.53 71.72 KM Plot
TGCT rs6503487 chr17:42122419 A/G 3.88E-8 132 45.1 28.87 65.13 KM Plot
TGCT rs650510 chr13:21839705 T/G 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs6505693 chr18:1206140 G/A 0.000153 131 95.23 28.53 45.83 KM Plot
TGCT rs6507121 chr18:32809071 C/G 0.000103 133 17.1 35.08 48.12 KM Plot
TGCT rs651165 chr3:172412887 G/A 1.84E-5 130 45.47 37.62 24.15 KM Plot
TGCT rs6545433 chr2:54817833 A/G 5.82E-5 132 46.3 42.27 22.42 KM Plot
TGCT rs658244 chr13:21850976 T/C 6.44E-7 132 46.3 35.73 14.42 KM Plot
TGCT rs658770 chr13:21849263 G/A 6.44E-7 132 46.3 35.73 14.42 KM Plot